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The reader understands hopefully that when we talk about protons and neutrons we do this just to make the theory understandable. There exist no particles in the theory only LESA and anti-LESA. When we write about protons just think of this as a netto-room LESA.
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I might be missing something but I don't think this theory explains complex molecules very well. What about cis and trans double-bonds? How does C6H12 have different chemical properties in its various configurations if its nothing but a conglomeration of LESA & anti-LESA?
The theory was interesting to read but does need to propose some testable hypothesis.